Zonorichia albicollis基因组bam文件下载
肿瘤外显子数据分析指南· Yuque - 语雀
Zonotrichia albicollis f A taxonomic species within the family Passerellidae – the white-throated sparrow. The white-throated sparrow is a passerine bird of the New World sparrow family Passerellidae.It measures 15 to 19 cm (5.9 to 7.5 in) in length with a wingspan of 23 cm (9.1 in). Zonotrichia albicollis Behavioural polymorphisms associated with morphs with a known genetic basi s are interesting to study since they provide a model system to investigate the molecular basis of The white-throated sparrow is a passerine bird of the New World sparrow family Passerellidae.It measures 15 to 19 cm (5.9 to 7.5 in) in length with a wingspan of 23 cm (9.1 in). A common winter bird of eastern woodlots, shuffling about on the ground in loose flocks, often coming to bird feeders that are placed close enough to the shelter of thickets. It is also widespread in the West in winter, but in much smaller numbers. In summer, White-throated Sparrows sing their clear whistles in northern forests. J. B. Falls and J. G. Kopachena Version: 1.0 — Published March 4, 2020 Text last updated May 21, 2010 The Zonotrichia_albicollis-1.0.1 assembly was submitted by White-throated sparrow consortium on April 2013. The assembly is on scaffold level, consisting of 37,661 contigs assembled into 6,018 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer.
19.02.2022
2021年1月14日 下图演示了规模化处理基因组数据的步骤，并显示了在Google Cloud 中执行的步骤 。 并生成报告（如PDF），可供生物信息学家和其他技术专家从云端下载。 从 样本创建已映射的DNA 读取后，您可以将这些BAM 文件转移 当测序得到的fastq文件map到基因组之后，我们通常会得到一个sam或者bam为 扩展 下载到文件之后，也许需要安装BWA来获取更精准的结果，但是如果不安装 BAM文件下载流量问题 — 请注意最后一句，该文档已经暗示了通过IGV查看变异位点会根据基因组位置下载BAM文件固定区域数据并展示在IGV软件中。 该文件可使用Samtools 查看或IGV 图形化显示。图3 显示了BAM 文件的. 内容，第一列表示reads 的名称；第二列表示reads 比对在基因组上的正 下面这个图是我从一份刚刚完成比对的bam文件中截取出来的内容： 要查看的是BAM，那么必须通过Samtools（可以到samtools的网站下载并 通过trim 过滤后的到的fq，需要比对到参考基因组上才能让这些数据有意义。 然后把小bam 文件及其索引下载到本地，打开IGV，加载hg38 参考基因组，然后 应用程序支持基于包含碱基检出文件(BCL) 的Illumina® 测序运行文件夹开始二级分析 访问Illumina 网站上的TruSight Tumor 170 支持页，查看相应文档、下载 如果在STAR 卸载基因组时发生错误，请检查是否存在挂起的共享内存，并视需要 比对输出— 生成BAM 文件格式的最终输出（文件中的内容已排序并标出了重复
【一起学生信】根据目标区域提取bam信息_自由平等~忠诚奉献 ...
Zonotrichia albicollis What do they look like? White-throated sparrows are small birds. The head has black stripes on top, with grey below and on the sides. Zonotrichia albicollis f A taxonomic species within the family Passerellidae – the white-throated sparrow.
samtools 生信菜鸟团
Zonotrichia albicollis f A taxonomic species within the family Passerellidae – the white-throated sparrow. The white-throated sparrow is a passerine bird of the New World sparrow family Passerellidae.It measures 15 to 19 cm (5.9 to 7.5 in) in length with a wingspan of 23 cm (9.1 in). Zonotrichia albicollis Behavioural polymorphisms associated with morphs with a known genetic basi s are interesting to study since they provide a model system to investigate the molecular basis of The white-throated sparrow is a passerine bird of the New World sparrow family Passerellidae.It measures 15 to 19 cm (5.9 to 7.5 in) in length with a wingspan of 23 cm (9.1 in). A common winter bird of eastern woodlots, shuffling about on the ground in loose flocks, often coming to bird feeders that are placed close enough to the shelter of thickets. It is also widespread in the West in winter, but in much smaller numbers. In summer, White-throated Sparrows sing their clear whistles in northern forests.
当测序得到的fastq文件map到基因组之后，我们通常会得到一个sam或者bam为扩展 下载到文件之后，也许需要安装BWA来获取更精准的结果，但是如果不安装 1. Zonotrichia_albicollis-1.0.1 Organism: Zonotrichia albicollis (white-throated sparrow) Submitter: White-throated sparrow consortium Date: 2013/04/30 Assembly level: Scaffold Genome representation: full RefSeq category: representative genome GenBank assembly accession: GCA_000385455.1 (latest) RefSeq assembly accession: GCF_000385455.1 (latest) IDs: 643228[UID] 643228 [GenBank] 777368 [RefSeq] Zonotrichia albicollis Humber Bay Park close.jpg 719 × 729; 458 KB Zonotrichia albicollis Humber Bay Park.jpg 2,248 × 1,606; 2.86 MB Zonotrichia albicollis James Gardens tan-striped.jpg 1,938 × 1,328; 2.03 MB
测序完成得到的reads我们会比对到参考基因组得到bam文件，bam文件一般很大，很多时候我们只需要提取部分内容。根据参考基因组位置提取 假设，我们已经得到了所有样本的sort好的bam文件，想看看自己设计的基因突变 如果是针对基因组序列，那么这个功能用处不大，但是针对转录本序列，统计 组蛋白修饰的CHIP-seq数据，很容易就下载了作者上传的测序数据，然后跑了我的 当测序得到的fastq文件map到基因组之后，我们通常会得到一个sam或者bam为扩展 下载到文件之后，也许需要安装BWA来获取更精准的结果，但是如果不安装 1. Zonotrichia_albicollis-1.0.1 Organism: Zonotrichia albicollis (white-throated sparrow) Submitter: White-throated sparrow consortium Date: 2013/04/30 Assembly level: Scaffold Genome representation: full RefSeq category: representative genome GenBank assembly accession: GCA_000385455.1 (latest) RefSeq assembly accession: GCF_000385455.1 (latest) IDs: 643228[UID] 643228 [GenBank] 777368 [RefSeq]
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